IGC

Publications over the last 5 years

2018

2017

Moura de Sousa, Jorge; Balbontín, Roberto and Durão Paulo and Gordo, Isabel. Multidrug-resistant bacteria compensate for the epistasis between resistances. PLoS Biol.. 2017;15(4):e2001741. [doi]

Maceiras, Ana Raquel; Almeida, Silvia Cristina Paiva and Mariotti-Ferrandiz Encarnita; Chaara, Wahiba; Jebbawi, Fadi; Six, Adrien; Hori, Shohei; Klatzmann, David and Faro Jose and Graca, Luis. T follicular helper and T follicular regulatory cells have different TCR specificity. Nat. Commun.. 2017;8:15067. [doi]

2016

Gonçalves, Margarida; Pontes, Ana; Almeida, Pedro; Barbosa, Raquel; Serra, Marta; Libkind, Diego and Hutzler Mathias; Gonçalves, Paula and Sampaio, José Paulo. Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts. Curr. Biol.. 2016;26(20):2750–2761. [doi]

Ramiro, Ricardo S; Costa, Henrique and Gordo, Isabel. Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small-colony variants with increased fitness in vivo and antibiotic collateral sensitivity. Evol. Appl.. 2016;9(8):994–1004. [doi]

Godoy-Vitorino, Filipa; Rodriguez-Hilario, Arnold and Alves Ana Luísa; Gonçalves, Filipa and Cabrera-Colon Beatriz; Mesquita, Cristina Sousa and Soares-Castro Pedro; Ferreira, Marisa; Marçalo, Ana; Vingada, José; Eira, Catarina and Santos, Pedro Miguel. The microbiome of a striped dolphin (Stenella coeruleoalba) stranded in Portugal. Res. Microbiol.. 2016. [doi]

Silva, Inês N; Santos, Pedro M; Santos, Mário R; Zlosnik, James E A; Speert, David P; Buskirk, Sean W; Bruger, Eric L; Waters, Christopher M; Cooper, Vaughn S and Moreira, Leonilde M. Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection. mSystems. 2016;1(3):e00029–16. [doi]

Barbosa, Raquel; Almeida, Pedro; Safar, Silvana V B and Santos Renata Oliveira; Morais, Paula B and Nielly-Thibault Lou; Leducq, Jean-Baptiste; Landry, Christian R; Gonçalves, Paula and Rosa, Carlos A and Sampaio José Paulo. Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae. Genome Biol. Evol.. 2016;8(2):317–329. [doi]

Azevedo, M; Sousa, A; Moura de Sousa, J; Thompson, J A; Proença, J T and Gordo, I. Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages. PLoS One. 2016;11(1):e0146123. [doi]

2015

Barroso-Batista, João; Demengeot, Jocelyne and Gordo, Isabel. Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria. Nat. Commun.. 2015;6:8945. [doi]

Almeida, Pedro; Barbosa, Raquel; Zalar, Polona and Imanishi Yumi; Shimizu, Kiminori; Turchetti, Benedetta; Legras, Jean-Luc; Serra, Marta; Dequin, Sylvie and Couloux Arnaud; Guy, Julie; Bensasson, Douda; Gonçalves, Paula and Sampaio, José Paulo. A population genomics insight into the Mediterranean origins of wine yeast domestication. Mol. Ecol.. 2015;24(21):5412–5427. [doi]

Reed, Patricia; Atilano, Magda L; Alves, Renato and Hoiczyk Egbert; Sher, Xinwei; Reichmann, Nathalie T and Pereira Pedro M; Roemer, Terry; Filipe, Sérgio R; Pereira-Leal, José B and Ligoxygakis, Petros and Pinho Mariana G. Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance. PLoS Pathog.. 2015;11(5):e1004891. [doi]

Ramos-Silva, Paula; Brito, Patrícia H; Serrano, Mónica; Henriques, Adriano O and Pereira-Leal, José B. Rethinking the Niche of Upper-Atmosphere Bacteria: Draft Genome Sequences of Bacillus aryabhattai C765 and Bacillus aerophilus C772, Isolated from Rice Fields. Genome Announc.. 2015;3(2). [doi]

de Sousa, Jorge Moura; Sousa, Ana and Bourgard, Catarina and Gordo Isabel. Potential for adaptation overrides cost of resistance. Future Microbiol.. 2015;10(9):1415–1431. [doi]

2014

Almeida, Pedro; Gonçalves, Carla; Teixeira, Sara; Libkind, Diego; Bontrager, Martin and Masneuf-Pomarède Isabelle; Albertin, Warren and Durrens Pascal; Sherman, David James; Marullo, Philippe; Hittinger, Chris Todd and Gonçalves, Paula and Sampaio José Paulo. A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nat. Commun.. 2014;5(May):4044. [doi]

Barroso-Batista, João; Sousa, Ana; Lourenço, Marta; Bergman, Marie-Louise; Sobral, Daniel and Demengeot Jocelyne; Xavier, Karina B and Gordo, Isabel. The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps. PLoS Genet.. 2014;10(3):e1004182. [doi]