Publications over the last 5 years


Gil, Fátima N; Gonçalves, Alina C; Becker, Jörg D and Viegas, Cristina A. Comparative analysis of transcriptomic responses to sub-lethal levels of six environmentally relevant pesticides in Saccharomyces cerevisiae. Ecotoxicology. 2018;27(7):871–889. [doi]

Silva, Inês N; Pessoa, Filipa D; Ramires, Marcelo J and Santos Mário R; Becker, Jörg D; Cooper, Vaughn S and Moreira, Leonilde M. The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope Properties Associated with Persistence in the Cystic Fibrosis Lung. J. Bacteriol.. 2018;200(17). [doi]

Prudêncio, Pedro; Guilgur, Leonardo G; Sobral, João; Becker, Jörg D; Martinho, Rui Gonçalo and Navarro-Costa, Paulo. The Trithorax group protein dMLL3/4 instructs the assembly of the zygotic genome at fertilization. EMBO Rep.. EMBO Press; 2018:e45728. [doi]

Silva, Inês N; Pessoa, Filipa D; Ramires, Marcelo J and Santos Mário R; Becker, Jörg D; Cooper, Vaughn S and Moreira, Leonilde M. OmpR regulator of Burkholderia multivorans controls mucoid-to-nonmucoid transition and other cell envelope properties associated with persistence in the cystic fibrosis lung. J. Bacteriol.. 2018. [doi]


Figueira, Inês; Tavares, Lucélia; Jardim, Carolina; Costa, Inês; Terrasso, Ana P; Almeida, Andreia F; Govers, Coen; Mes, Jurriaan J; Gardner, Rui; Becker, Jörg D; McDougall, Gordon J; Stewart, Derek; Filipe, Augusto; Kim, Kwang S; Brites, Dora; Brito, Catarina and Brito M Alexandra and Santos, Cláudia N. Blood-brain barrier transport and neuroprotective potential of blackberry-digested polyphenols: an in vitro study. Eur. J. Nutr.. 2017. [doi]

Silva, Inês N; Ramires, Marcelo J; Azevedo, Lisa A and Guerreiro Ana R; Tavares, Andreia C; Becker, Jörg D and Moreira, Leonilde M. Regulator LdhR and d-Lactate Dehydrogenase LdhA of Burkholderia multivorans Play Roles in Carbon Overflow and in Planktonic Cellular Aggregate Formation. Appl. Environ. Microbiol.. 2017;83(19). [doi]

Ortiz-Ramírez, Carlos; Michard, Erwan; Simon, Alexander A; Damineli, Daniel S C; Hernández-Coronado, Marcela; Becker, Jörg D and Feijó, José A. GLUTAMATE RECEPTOR-LIKE channels are essential for chemotaxis and reproduction in mosses. Nature. 2017;549(7670):91–95. [doi]

Batista, Rita; Fonseca, Cátia; Planchon, Sébastien; Negrão, Sónia; Renaut, Jenny and Oliveira, M Margarida. Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants. Sci. Rep.. 2017;7(1):10624. [doi]

Ministro, Augusto; de Oliveira, Paula; Nunes, Raquel J and Dos Santos Rocha André; Correia, Adriana; Carvalho, Tânia; Rino, José; Faísca, Pedro; Becker, Jorg D; Goyri-O'Neill, João; Pina, Filomena; Poli, Esmeralda; Silva-Santos, Bruno; Pinto, Fausto; Mareel, Marc; Serre, Karine and Constantino Rosa Santos, Susana. Low-dose ionizing radiation induces therapeutic neovascularization in a pre-clinical model of hindlimb ischemia. Cardiovasc. Res.. 2017;113(7):783–794. [doi]

Ruprecht, Colin; Proost, Sebastian; Hernandez-Coronado, Marcela; Ortiz-Ramirez, Carlos; Lang, Daniel; Rensing, Stefan A; Becker, Jörg D; Vandepoele, Klaas and Mutwil, Marek. Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. Plant J.. 2017;90(3):447–465. [doi]


Vasconcelos, Francisca F; Sessa, Alessandro; Laranjeira, Cátia; Raposo, Alexandre A S F; Teixeira, Vera and Hagey Daniel W; Tomaz, Diogo M; Muhr, Jonas; Broccoli, Vania and Castro, Diogo S. MyT1 Counteracts the Neural Progenitor Program to Promote Vertebrate Neurogenesis. Cell Rep.. Cell Press; 2016;17(2):469–483. [doi]

Muñoz-Ruiz, Miguel; Ribot, Julie C; Grosso, Ana R and Gonçalves-Sousa Natacha; Pamplona, Ana; Pennington, Daniel J; Regueiro, José R; Fernández-Malavé, Edgar and Silva-Santos, Bruno. TCR signal strength controls thymic differentiation of discrete proinflammatory $\gamma$$\delta$ T cell subsets. Nat. Immunol.. 2016;17(6):721–727. [doi]

Sousa, Inês; Abrantes, Patrícia; Francisco, Vânia; Teixeira, Gilberto; Monteiro, Marta; Neves, João; Norte, Ana; Robalo Cordeiro, Carlos; Moura E Sá, João; Reis, Ernestina; Santos, Patrícia; Oliveira, Manuela; Sousa, Susana; Fradinho, Marta and Malheiro Filipa; Negrão, Luís; Feijó, Salvato and Oliveira, Sofia A. Multicentric Genome-Wide Association Study for Primary Spontaneous Pneumothorax. PLoS One. 2016;11(5):e0156103. [doi]

Oliveira, Rui F; Simões, José M; Teles, Magda C and Oliveira Catarina R; Becker, Jorg D and Lopes, João S. Assessment of fight outcome is needed to activate socially driven transcriptional changes in the zebrafish brain. Proc. Natl. Acad. Sci. U. S. A.. 2016;113(5):E654–61. [doi]

Ortiz-Ramírez, Carlos; Hernandez-Coronado, Marcela and Thamm Anna; Catarino, Bruno; Wang, Mingyi; Dolan, Liam; Feijó, José A and Becker, Jörg D. A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants. Mol. Plant. Elsevier; 2016;9(2):205–220. [doi]

MacAlister, Cora A; Ortiz-Ramírez, Carlos; Becker, Jörg D; Feijó, José A and Lippman, Zachary B. Hydroxyproline O-arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens. Plant J.. 2016;85(2):193–208. [doi]


Lopes, João Sollari; Abril-de-Abreu, Rodrigo and Oliveira, Rui F. Brain Transcriptomic Response to Social Eavesdropping in Zebrafish (Danio rerio). PLoS One. 2015;10(12):e0145801. [doi]

Costa, Aida and Henrique, Domingos. Transcriptome profiling of induced hair cells (iHCs) generated by combined expression of Gfi1, Pou4f3 and Atoh1 during embryonic stem cell differentiation. Genom Data. 2015;6:77–80. [doi]

Abrantes, Patrícia; Santos, Maria M; Sousa, Inês; Xavier, Joana M; Francisco, Vânia; Krug, Tiago and Sobral João; Matos, Mafalda; Martins, Madalena and Jacinto António; Coiteiro, Domingos and Oliveira, Sofia A. Genetic Variants Underlying Risk of Intracranial Aneurysms: Insights from a GWAS in Portugal. PLoS One. 2015;10(7):e0133422. [doi]

Costa, Aida; Sanchez-Guardado, Luis; Juniat, Stephanie and Gale Jonathan E; Daudet, Nicolas and Henrique, Domingos. Generation of sensory hair cells by genetic programming with a combination of transcription factors. Development. Oxford University Press for The Company of Biologists Limited; 2015;142(11):1948–1959. [doi]

Xavier, Joana M; Shahram, Farhad; Sousa, Inês and Davatchi Fereydoun; Matos, Mafalda; Abdollahi, Bahar Sadeghi; Sobral, João; Nadji, Abdolhadi; Oliveira, Manuela; Ghaderibarim, Fahmida; Shafiee, Niloofar Mojarad and Oliveira, Sofia A. FUT2: filling the gap between genes and environment in Behçet's disease? Ann. Rheum. Dis.. 2015;74(3):618–624. [doi]


Rodrigues, Joana L; Sousa, Marta; Prather, Kristala L J and Kluskens Leon D and Rodrigues, Ligia R. Selection of Escherichia coli heat shock promoters toward their application as stress probes. J. Biotechnol.. 2014;188:61–71. [doi]

Becker, Jörg D; Takeda, Seiji; Borges, Filipe and Dolan Liam and Feijó, José A. Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. BMC Plant Biol.. 2014;14:197. [doi]

Carvalho, Ana S; Ribeiro, Helena; Voabil, Paula; Penque, Deborah; Jensen, Ole N; Molina, Henrik and Matthiesen, Rune. Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced ER stress. Mol. Cell. Proteomics. 2014. [doi]

Martins, Isabel; Hartmann, Diego O; Alves, Paula C and Martins Celso; Garcia, Helga; Leclercq, Céline C and Ferreira Rui; He, Ji; Renaut, Jenny; Becker, Jörg D and Silva Pereira, Cristina. Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source. BMC Genomics. 2014;15:613. [doi]

Gil, Fátima N; Becker, Jörg D and Viegas, Cristina A. Potential mechanisms underlying response to effects of the fungicide pyrimethanil from gene expression profiling in Saccharomyces cerevisiae. J. Agric. Food Chem.. 2014;62(23):5237–5247. [doi]

Santos, Mário R; Marques, Andreia T; Becker, Jörg D and Moreira, Leonilde M. The Sinorhizobium meliloti EmrR regulator is required for efficient colonization of Medicago sativa root nodules. Mol. Plant. Microbe. Interact.. 2014;27(4):388–399. [doi]

Monteiro, Joana; Aires, Rita; Becker, Jörg D and Jacinto António and Certal, Ana C and Rodríguez-León Joaquín. V-ATPase proton pumping activity is required for adult zebrafish appendage regeneration. PLoS One. 2014;9(3):e92594. [doi]

Liehl, Peter; Zuzarte-Luís, Vanessa; Chan, Jennie and Zillinger Thomas; Baptista, Fernanda; Carapau, Daniel and Konert Madlen; Hanson, Kirsten K; Carret, Céline and Lassnig Caroline; Müller, Mathias; Kalinke, Ulrich and Saeed Mohsan; Chora, Angelo Ferreira; Golenbock, Douglas T; Strobl, Birgit; Prudêncio, Miguel; Coelho, Luis P; Kappe, Stefan H; Superti-Furga, Giulio; Pichlmair, Andreas; Vigário, Ana M; Rice, Charles M and Fitzgerald Katherine A; Barchet, Winfried and Mota, Maria M. Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection. Nat. Med.. 2014;20(1):47–53. [doi]

dos Santos, Catarina Rodrigues; Domingues, Germana; Matias, Inês; Matos, João; Fonseca, Isabel; de Almeida, José Mendes and Dias, Sérgio. LDL-cholesterol signaling induces breast cancer proliferation and invasion. Lipids Health Dis.. 2014;13:16. [doi]