Publications over the last 5 years



Martins, Celso; Silva Pereira, Cristina; Plechkova, Natalia V; Seddon, Kenneth R; Wang, Jianlan; Whitfield, Susan and Wong, Wingyui. Mycobiota of silk-faced ancient Mogao Grottoes manuscripts belonging to the Stein collection in the British library. Int. Biodeterior. Biodegradation. 2018;134:1–6. [doi]

Almeida, Celso; Silva Pereira, Cristina; Gonzalez-Menendez, Victor; Bills, Gerald; Pascual, Javier and Sánchez-Hidalgo Marina; Kehraus, Stefan and Genilloud, Olga. Unveiling concealed functions of endosymbiotic bacteria harboured in the Ascomycota Stachylidium bicolor. Appl. Environ. Microbiol.. 2018. [doi]

Semedo-Aguiar, Ana P; Pereira-Leal, Jose B and Leite, Ricardo B. Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde. Toxins. 2018;10(5). [doi]

Lopes, Elísia; Fernandes, Tânia; Machado, Miguel P; Carriço, João André; Melo-Cristino, José; Ramirez, Mário and Martins, Elisabete R. Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015. Euro Surveill.. 2018;23(21). [doi]


Moura de Sousa, Jorge; Balbontín, Roberto; Durão, Paulo and Gordo, Isabel. Multidrug-resistant bacteria compensate for the epistasis between resistances. PLoS Biol.. 2017;15(4):e2001741. [doi]

Maceiras, Ana Raquel; Almeida, Silvia Cristina Paiva and Mariotti-Ferrandiz Encarnita; Chaara, Wahiba; Jebbawi, Fadi; Six, Adrien; Hori, Shohei; Klatzmann, David and Faro Jose and Graca, Luis. T follicular helper and T follicular regulatory cells have different TCR specificity. Nat. Commun.. 2017;8:15067. [doi]


Gonçalves, Margarida; Pontes, Ana; Almeida, Pedro and Barbosa Raquel; Serra, Marta; Libkind, Diego; Hutzler, Mathias; Gonçalves, Paula and Sampaio, José Paulo. Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts. Curr. Biol.. 2016;26(20):2750–2761. [doi]

Ramiro, Ricardo S; Costa, Henrique and Gordo, Isabel. Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small-colony variants with increased fitness in vivo and antibiotic collateral sensitivity. Evol. Appl.. 2016;9(8):994–1004. [doi]

Godoy-Vitorino, Filipa; Rodriguez-Hilario, Arnold; Alves, Ana Luísa; Gonçalves, Filipa; Cabrera-Colon, Beatriz; Mesquita, Cristina Sousa; Soares-Castro, Pedro and Ferreira Marisa; Marçalo, Ana; Vingada, José and Eira Catarina and Santos, Pedro Miguel. The microbiome of a striped dolphin (Stenella coeruleoalba) stranded in Portugal. Res. Microbiol.. 2016. [doi]

Silva, Inês N; Santos, Pedro M; Santos, Mário R and Zlosnik James E A; Speert, David P; Buskirk, Sean W and Bruger Eric L; Waters, Christopher M and Cooper, Vaughn S and Moreira Leonilde M. Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection. mSystems. 2016;1(3):e00029–16. [doi]

Barbosa, Raquel; Almeida, Pedro; Safar, Silvana V B and Santos Renata Oliveira; Morais, Paula B; Nielly-Thibault, Lou; Leducq, Jean-Baptiste; Landry, Christian R; Gonçalves, Paula; Rosa, Carlos A and Sampaio, José Paulo. Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae. Genome Biol. Evol.. 2016;8(2):317–329. [doi]

Azevedo, M; Sousa, A; Moura de Sousa, J; Thompson, J A; Proença, J T and Gordo, I. Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages. PLoS One. 2016;11(1):e0146123. [doi]


Barroso-Batista, João; Demengeot, Jocelyne and Gordo, Isabel. Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria. Nat. Commun.. 2015;6:8945. [doi]

Almeida, Pedro; Barbosa, Raquel; Zalar, Polona and Imanishi Yumi; Shimizu, Kiminori; Turchetti, Benedetta and Legras Jean-Luc; Serra, Marta; Dequin, Sylvie; Couloux, Arnaud; Guy, Julie; Bensasson, Douda; Gonçalves, Paula and Sampaio, José Paulo. A population genomics insight into the Mediterranean origins of wine yeast domestication. Mol. Ecol.. 2015;24(21):5412–5427. [doi]

Reed, Patricia; Atilano, Magda L; Alves, Renato and Hoiczyk Egbert; Sher, Xinwei; Reichmann, Nathalie T and Pereira Pedro M; Roemer, Terry; Filipe, Sérgio R and Pereira-Leal José B; Ligoxygakis, Petros and Pinho, Mariana G. Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance. PLoS Pathog.. 2015;11(5):e1004891. [doi]

Ramos-Silva, Paula; Brito, Patrícia H; Serrano, Mónica; Henriques, Adriano O and Pereira-Leal, José B. Rethinking the Niche of Upper-Atmosphere Bacteria: Draft Genome Sequences of Bacillus aryabhattai C765 and Bacillus aerophilus C772, Isolated from Rice Fields. Genome Announc.. 2015;3(2). [doi]

de Sousa, Jorge Moura; Sousa, Ana and Bourgard, Catarina and Gordo Isabel. Potential for adaptation overrides cost of resistance. Future Microbiol.. 2015;10(9):1415–1431. [doi]